U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX385631: GSM1277198: RNASeq_riboM_contDevB_N2_36hr; Caenorhabditis elegans; RNA-Seq
2 ILLUMINA (Illumina HiSeq 2000) runs: 60.5M spots, 3.1G bases, 2Gb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Developmental Timecourses total-RNA sequencing [Ribosome repleted total RNA]
PRJNA230377 • SRP033412 • All experiments • All runs
show Abstracthide Abstract
We report the presence of extensive, transcriptionally controlled oscillations in the C. elegans, developmental transcriptome. Furthermore, using ribosome profiling, we show that these oscillating transcripts are actively translated. Overall design: Examination of two timecourses that were collected over C. elegans development and analyzed by RNA-seq of "RiboMinus" libraries
Sample: RNASeq_riboM_contDevB_N2_36hr
SAMN02428715 • SRS509737 • All experiments • All runs
Organism: Caenorhabditis elegans
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: total RNA isolation was performed using Tri-Reagent (MRC) Library preparation was performed using the ScriptSeq v2 RNA-Seq library preparation kit (Epicentre) according to the manufacturer's protocol
Experiment attributes:
GEO Accession: GSM1277198
Links:
External link:
Runs: 2 runs, 60.5M spots, 3.1G bases, 2Gb
Run# of Spots# of BasesSizePublished
SRR104125750,000,0002.6G1.6Gb2014-03-03
SRR104125810,484,470534.7M354.2Mb2014-03-03

ID:
553483

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...